Department of Collective Behavior Publications

Journal Article (126)

1. 1.
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   Renaud Bastien, Amir Porat, and Yasmine Meroz, "Towards a framework for collective behavior in growth-driven systems, based on plant-inspired allotropic pairwise interactions," Bioinspiration & Biomimetics 14 (5), 055004 (2019).
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   Aneesh P. H. Bose, Daniel Zayonc, Nikolaos Avrantinis, Natasha Ficzycz, Jonathan Fischer-Rush, Fiona T. Francis, Siobhan Gray, Faye Manning, Haley Robb, Coralee Schmidt, Christine Spice, Aari Umedaly, Jeff Warden, and Isabelle M. Côté​, "Effects of handling and short-term captivity: A multi-behaviour approach using red sea urchins, Mesocentrotus franciscanus," PeerJ 7, e6556 (2019).
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   Hanja B. Brandl, Damien R. Farine, Caterina Funghi, Wiebke Schuett, and Simon C. Griffith, "Early-life social environment predicts social network position in wild zebra finches," Proceedings of the Royal Society B: Biological Sciences 286 (1897), 20182579 (2019).
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   Gerald G. Carter, Gabriele Schino, and Damien R. Farine, "Challenges in assessing the roles of nepotism and reciprocity in cooperation networks," Animal Behaviour 150, 255-271 (2019).
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   Katherine E. Conen and Camillo Padoa-Schioppa, "Partial adaptation to the value range in the macaque orbitofrontal cortex," The Journal of Neuroscience 39 (18), 3498-3513 (2019).
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   Damien R. Farine and Lucy M. Aplin, "Spurious inference when comparing networks," BioRxiv 116 (34), 16674-16675 (2019).
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   Fritz A. Francisco, Paul Nührenberg, and Lyndon Alexander Jordan, "A low-cost, open-source framework for tracking and behavioural analysis of animals in aquatic ecosystems," bioRxiv (2019).
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   Jacob M. Graving, Daniel Chae, Hemal Naik, Liang Li, Benjamin Koger, Blair R. Costelloe, and Iain D. Couzin, "Fast and robust animal pose estimation," BioRxiv (2019).
9. 9.
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   Peng He, Adriana Alexandra Maldonado-Chaparro, and Damien R. Farine, "The role of habitat configuration in shaping social structure: A gap in studies of animal social complexity," Behavioral Ecology and Sociobiology 73, 9 (2019).
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    Friederike Hillemann, E. F. Cole, S. C. Keen, B. C. Sheldon, and Damien R. Farine, "Diurnal variation in the production of vocal information about food supports a model of social adjustment in wild songbirds," Proceedings of the Royal Society B: Biological Sciences 286 (1897), 20182740 (2019).
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    Albert B. Kao and Iain D. Couzin, "Modular structure within groups causes information loss but can improve decision accuracy," Philosophical Transactions of the Royal Society of London, Series B: Biological Sciences 374 (1774), 20180378 (2019).
12. 12.
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    Elizabeth McKenna Kelly, "Committed for the long haul: Do nonapeptides regulate long-term pair maintenance in zebra finches?," General and Comparative Endocrinology 276, 86-92 (2019).
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    Karsten Klein, Björn Sommer, Hieu T. Nim, Andrea Flack, Kamran Safi, Mate Nagy, Stefan P. Feyer, Ying Zhang, Kim Rehberg, Alexej Gluschkow, Michael Quetting, Wolfgang Fiedler, Martin Wikelski, and Falk Schreiber, "Fly with the flock: Immersive solutions for animal movement visualization and analytics," Interface: Journal of the Royal Society 16, 20180794 (2019).
14. 14.
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    Masanori Kohda, Takashi Hotta, Tomohiro Takeyama, Satoshi Awata, Hirokazu Tanaka, Jun-ya Asai, and Lyndon Alexander Jordan, "If a fish can pass the mark test, what are the implications for consciousness and self-awareness testing in animals?," PLoS Biology 17 (2), e3000021 (2019).
15. 15.
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    Stephen D. J. Lang, Richard P. Mann, and Damien R. Farine, "Temporal activity patterns of predators and prey across broad geographic scales," Behavioral Ecology 30 (1), 172-180 (2019).
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    Adriana Alexandra Maldonado-Chaparro and Damien R. Farine, "Demographic processes in animal networks are a question of time: A comment on Daizaburo and Johnson," Behavioral Ecology , arz099 (2019).
17. 17.
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    Yasmine Meroz, Renaud Bastien, and L. Mahadevan, "Spatio-temporal integration in plant tropisms," Interface: Journal of the Royal Society 16, 20190038 (2019).
18. 18.
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    B. Moulia, Renaud Bastien, H. Chauvet-Thiry, and N. Leblanc-Fournier, "Posture control in land plants: Growth, position sensing, proprioception, balance, and elasticity," Journal of Experimental Botany 70 (14), 3467-3494 (2019).
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    Iyad Rahwan, Manuel Cebrian, Nick Obradovich, Josh Bongard, Jean-François Bonnefon, Cynthia Breazeal, Jacob W. Crandall, Nicholas A. Christakis, Iain D. Couzin, Matthew O. Jackson, Nicholas R. Jennings, Ece Kamar, Isabel M. Kloumann, Hugo Larochelle, David Lazer, Richard McElreath, Alan Mislove, David C. Parkes, Alex Sandy Pentland, Margaret E. Roberts, Azim Shariff, Joshua B. Tenenbaum, and Michael Wellman, "Machine behaviour," Nature 568, 477-486 (2019).
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    Björn Sommer, Stefan Feyer, Daniel Klinkhammer, Karsten Klein, Jonathan Wieland, Daniel Fink, Wolfgang Fiedler, Andrea Flack, Mate Nagy, Martin Wikelski, Harald Reiterer, and Falk Schreiber, "BinocularsVR – A VR experience for the exhibition "From Lake Constance to Africa, a long distance travel with ICARUS"," Electronic Imaging , 177-1-177-8 (2019).
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    Vivek Hari Sridhar, Dominique G. Roche, and Simon Gingins, "Tracktor: Image-based automated tracking of animal movement and behaviour," Methods in Ecology and Evolution 10 (6), 815-820 (2019).
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    Josefin Sundin, Mirjam Amcoff, Fernando Mateos-Gonzalez, Graham D. Raby, and Timothy D. Clark, "Long-term acclimation to near-future ocean acidification has negligible effects on energetic attributes in a juvenile coral reef fish," Oecologia 190 (3), 689-702 (2019).
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    Gerald S. Wilkinson, Gerald G. Carter, Kirsten M. Bohn, Barbara Caspers, Gloriana Chaverri, Damien R. Farine, Linus Günther, Gerald Kerth, Mirjam Knörnschild, Frieder Mayer, Martina Nagy, Jorge Ortega, and Krista Patriquin, "Kinship, association, and social complexity in bats," Behavioral Ecology and Sociobiology 73, 7 (2019).
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    Gustavo Alarcon-Nieto, Jacob M. Graving, James Klarevas-Irby, Adriana Alexandra Maldonado-Chaparro, Inge Mueller, and Damien R. Farine, "An automated barcode tracking system for behavioural studies in birds," Methods in Ecology and Evolution 9 (6), 1536-1547 (2018).
25. 25.
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    Chainarong Amornbunchornvej, Ivan Brugere, Ariana Strandburg-Peshkin, Damien R. Farine, Margaret Chatham Crofoot, and Tanya Y. Berger-Wolf, "Coordination event detection and initiator identification in time series data," ACM Transactions on Knowledge Discovery from Data (TKDD) 12 (5), 53 (2018).
26. 26.
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    Renaud Bastien, Olivia Guayasamin, Stéphane Douady, and Bruno Moulia, "Coupled ultradian growth and curvature oscillations during gravitropic movement in disturbed wheat coleoptiles," PLoS One 13 (3), e0194893 (2018).
27. 27.
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    Andrew M. Berdahl, Albert B. Kao, Andrea Flack, Peter A. H. Westley, Edward A. Codling, Iain D. Couzin, Anthony I. Dell, and Dora Biro, "Collective animal navigation and migratory culture: From theoretical models to empirical evidence," Philosophical Transactions of the Royal Society of London, Series B: Biological Sciences 373 (1746), 20170009 (2018).
28. 28.
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    Neeltje J. Boogert, Robert F. Lachlan, Karen A. Spencer, Christopher N. Templeton, and Damien R. Farine, "Stress hormones, social associations and song learning in zebra finches," Philosophical Transactions of the Royal Society of London, Series B: Biological Sciences 373 (1756), 20170290 (2018).
29. 29.
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    Mauricio Cantor and Damien R. Farine, "Simple foraging rules in competitive environments can generate socially structured populations," Ecology and Evolution 8 (10), 4978-4991 (2018).
30. 30.
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    Ida Carlén, Len Thomas, Julia Carlström, Mats Amundin, Jonas Teilmann, Nick Tregenza, Jakob Tougaard, Jens C. Koblitz, Signe Sveegaard, Daniel Wennerberg, Olli Loisa, Michael Dähne, Katharina Brundiers, Monika Kosecka, Line Anker Kyhn, Cinthia Tiberi Ljungqvist, Iwona Pawliczka, Radomil Koza, Bartlomiej Arciszewski, Anders Galatius, Martin Jabbusch, Jussi Laaksonlaita, Jussi Niemi, Sami Lyytinen, Anja Gallus, Harald Benke, Penina Blankett, Krzysztof E. Skóra, and Alejandro Acevedo-Gutiérrez, "Basin-scale distribution of harbour porpoises in the Baltic Sea provides basis for effective conservation actions," Biological Conservation 226, 42-53 (2018).
31. 31.
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    Nora V. Carlson, Susan D. Healy, and Christopher N. Templeton, "Mobbing," Current Biology 28 (18), R1081-R1082 (2018).
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    Gerald G. Carter, Sofia Forss, Rachel A. Page, and John M. Ratcliffe, "Younger vampire bats (Desmodus rotundus) are more likely than adults to explore novel objects," PLoS One 13 (5), e0196889 (2018).
33. 33.
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    Blair R. Costelloe, "Participation by a male Grant's gazelle in the defence of a fawn," African Journal of Ecology 56 (2), 378-380 (2018).
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    Blair R. Costelloe and Daniel I. Rubenstein, "Temporal structuring of vigilance behavior by female Thomson’s gazelles with hidden fawns," Animal Behaviour 145, 87-97 (2018).
35. 35.
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    Iain D. Couzin, "Collective animal migration," Current Biology 28 (17), R976-R980 (2018).
36. 36.
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    Iain D. Couzin, "Synchronization: The key to effective communication in animal collectives," Trends in Cognitive Sciences 22 (10), 844-846 (2018).
37. 37.
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    David R. Daversa, Andrea Manica, Jaime Bosch, Jolle Wolter Jolles, and Trenton W. J. Garner, "Routine habitat switching alters the likelihood and persistence of infection with a pathogenic parasite," Functional Ecology 32 (5), 1262-1270 (2018).
38. 38.
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    Grace H. Davis, Margaret Chatham Crofoot, and Damien R. Farine, "Estimating the robustness and uncertainty of animal social networks using different observational methods," Animal Behaviour 141, 29-44 (2018).
39. 39.
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    Johann Delcourt, Noam Y. Miller, Iain D. Couzin, and Simon Garnier, "Methods for the effective study of collective behavior in a radial arm maze," Behavior Research Methods 50 (4), 1673-1685 (2018).
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    Julien Derr, Renaud Bastien, Étienne Couturier, and Stéphane Douady, "Fluttering of growing leaves as a way to reach flatness: Experimental evidence on Persea americana," Interface: Journal of the Royal Society 15 (138), 20170595 (2018).
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    Thomas Douëllou, Wessam Galia, Stéphane Kerangart, Thierry Marchal, Nadège Milhau, Renaud Bastien, Marion Bouvier, Samuel Buff, Marie-Christine Montel, and Delphine Sergentet-Thevenot, "Milk fat globules hamper adhesion of enterohemorrhagic Escherichia coli to enterocytes: In vitro and in vivo evidence," Frontiers in Microbiology 9, 947 (2018).
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    Robert Ian Etheredge, Capucine Avenas, Matthew J. Armstrong, and Molly E. Cummings, "Sex-specific cognitive–behavioural profiles emerging from individual variation in numerosity discrimination in Gambusia affinis," Animal Cognition 21 (1), 37-53 (2018).
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    Damien R. Farine, "When to choose dynamic versus static social network analysis," Journal of Animal Ecology 87 (1), 128-138 (2018).
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    Andrea Flack, Mate Nagy, Wolfgang Fiedler, Iain D. Couzin, and Martin Wikelski, "From local collective behaviour to global migratory patterns in white storks," Science 360 (6391), 911-914 (2018).
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    Simon Gingins, Fanny Marcadier, Sharon Wismer, Océane Krattinger, Fausto Quattrini, Redouan Bshary, and Sandra A. Binning, "The performance of cleaner wrasse, Labroides dimidiatus, in a reversal learning task varies across experimental paradigms," PeerJ 6, e4745 (2018).
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    Andrew M. Hein, Michael A. Gil, Colin R. Twomey, Iain D. Couzin, and Simon A. Levin, "Conserved behavioral circuits govern high-speed decision-making in wild fish shoals," Proceedings of the National Academy of Sciences of the United States of America 115 (48), 12224-12228 (2018).
47. 47.
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    William J. E. Hoppitt and Damien R. Farine, "Association indices for quantifying social relationships: How to deal with missing observations of individuals or groups," Animal Behaviour 136, 227-238 (2018).
48. 48.
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    M. Y. Hu, Etienne Lein, M. Bleich, F. Melzner, and M. Stumpp, "Trans‐life cycle acclimation to experimental ocean acidification affects gastric pH homeostasis and larval recruitment in the sea star Asterias rubens," Acta Physiologica 223 (2), e13169 (2018).
49. 49.
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    Jolle Wolter Jolles, Kate L. Laskowski, Neeltje J. Boogert, and Andrea Manica, "Repeatable group differences in the collective behaviour of stickleback shoals across ecological contexts," Proceedings of the Royal Society B: Biological Sciences 285 (1872), 20172629 (2018).
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    Jolle Wolter Jolles, "Comment on "Consistency of fish‐shoal social network structure under laboratory conditions (Gaffney and Webster, 2018)"," Journal of Fish Biology 93 (5), 762-763 (2018).