Department of Collective Behavior Publications
Journal Article (133)
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1.Journal ArticleNora V. Carlson, Erick Greene, and Christopher N. Templeton, "Nuthatches vary their alarm calls based upon the source of the eavesdropped signals," Nature Communications 11, 526 (2020).
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2.Journal ArticleFritz A. Francisco, Paul Nührenberg, and Lyndon Alexander Jordan, "A low-cost, open-source framework for tracking and behavioural analysis of animals in aquatic ecosystems," bioRxiv (2020).
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3.Journal ArticleRenaud Bastien, Amir Porat, and Yasmine Meroz, "Towards a framework for collective behavior in growth-driven systems, based on plant-inspired allotropic pairwise interactions," Bioinspiration & Biomimetics 14 (5), 055004 (2019).
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4.Journal ArticleAneesh P. H. Bose, Daniel Zayonc, Nikolaos Avrantinis, Natasha Ficzycz, Jonathan Fischer-Rush, Fiona T. Francis, Siobhan Gray, Faye Manning, Haley Robb, Coralee Schmidt, Christine Spice, Aari Umedaly, Jeff Warden, and Isabelle M. Côté, "Effects of handling and short-term captivity: A multi-behaviour approach using red sea urchins, Mesocentrotus franciscanus," PeerJ 7, e6556 (2019).
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5.Journal ArticleAneesh P. H. Bose, H. Zimmermann, and K. M. Sefc, "Freshwater hydrozoan blooms alter activity and behaviour of territorial cichlids in Lake Tanganyika," Royal Society Open Science 6 (11), 191053 (2019).
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6.Journal ArticleHanja B. Brandl, Damien R. Farine, Caterina Funghi, Wiebke Schuett, and Simon C. Griffith, "Early-life social environment predicts social network position in wild zebra finches," Proceedings of the Royal Society B: Biological Sciences 286 (1897), 20182579 (2019).
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7.Journal ArticleGerald G. Carter, Gabriele Schino, and Damien R. Farine, "Challenges in assessing the roles of nepotism and reciprocity in cooperation networks," Animal Behaviour 150, 255-271 (2019).
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8.Journal ArticleKatherine E. Conen and Camillo Padoa-Schioppa, "Partial adaptation to the value range in the macaque orbitofrontal cortex," The Journal of Neuroscience 39 (18), 3498-3513 (2019).
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9.Journal ArticleJacob D. Davidson and Ahmed El Hady, "Foraging as an evidence accumulation process," PLoS Computational Biology 15 (7), e1007060 (2019).
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10.Journal ArticleDamien R. Farine and Lucy M. Aplin, "Spurious inference when comparing networks," Proceedings of the National Academy of Sciences of the United States of America 116 (34), 16674-16675 (2019).
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11.Journal ArticleJacob M. Graving, D. Chae, Hemal Naik, Liang Li, Benjamin Koger, Blair R. Costelloe, and Iain D. Couzin, "DeepPoseKit, a software toolkit for fast and robust animal pose estimation using deep learning," eLife 8, e47994 (2019).
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12.Journal ArticlePeng He, Adriana Alexandra Maldonado-Chaparro, and Damien R. Farine, "The role of habitat configuration in shaping social structure: A gap in studies of animal social complexity," Behavioral Ecology and Sociobiology 73, 9 (2019).
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13.Journal ArticleFriederike Hillemann, E. F. Cole, S. C. Keen, B. C. Sheldon, and Damien R. Farine, "Diurnal variation in the production of vocal information about food supports a model of social adjustment in wild songbirds," Proceedings of the Royal Society B: Biological Sciences 286 (1897), 20182740 (2019).
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14.Journal ArticleJolle Wolter Jolles, Helen D. Briggs, Yimen G. Araya-Ajoy, and Neeltje J. Boogert, "Personality, plasticity and predictability in sticklebacks: bold fish are less plastic and more predictable than shy fish," Animal Behaviour 154, 193-202 (2019).
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15.Journal ArticleAlbert B. Kao and Iain D. Couzin, "Modular structure within groups causes information loss but can improve decision accuracy," Philosophical Transactions of the Royal Society of London, Series B: Biological Sciences 374 (1774), 20180378 (2019).
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16.Journal ArticleElizabeth McKenna Kelly, "Committed for the long haul: Do nonapeptides regulate long-term pair maintenance in zebra finches?," General and Comparative Endocrinology 276, 86-92 (2019).
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17.Journal ArticleKarsten Klein, Björn Sommer, Hieu T. Nim, Andrea Flack, Kamran Safi, Mate Nagy, Stefan P. Feyer, Ying Zhang, Kim Rehberg, Alexej Gluschkow, Michael Quetting, Wolfgang Fiedler, Martin Wikelski, and Falk Schreiber, "Fly with the flock: Immersive solutions for animal movement visualization and analytics," Interface: Journal of the Royal Society 16, 20180794 (2019).
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18.Journal ArticleMasanori Kohda, Takashi Hotta, Tomohiro Takeyama, Satoshi Awata, Hirokazu Tanaka, Jun-ya Asai, and Lyndon Alexander Jordan, "If a fish can pass the mark test, what are the implications for consciousness and self-awareness testing in animals?," PLoS Biology 17 (2), e3000021 (2019).
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19.Journal ArticleStephen D. J. Lang, Richard P. Mann, and Damien R. Farine, "Temporal activity patterns of predators and prey across broad geographic scales," Behavioral Ecology 30 (1), 172-180 (2019).
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20.Journal ArticleM. S. McCarthy, M. L. Despres-Einspenner, Damien R. Farine, L. Samuni, S. Angedakin, M. Arandjelovic, C. Boesch, P. Dieguez, K. Havercamp, A. Knight, K. E. Langergraber, R. M. Wittig, and H. S. Kuhl, "Camera traps provide a robust alternative to direct observations for constructing social networks of wild chimpanzees," Animal Behaviour 157, 227-238 (2019).
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21.Journal ArticleYasmine Meroz, Renaud Bastien, and L. Mahadevan, "Spatio-temporal integration in plant tropisms," Interface: Journal of the Royal Society 16, 20190038 (2019).
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22.Journal ArticleBruno Moulia, Renaud Bastien, Hugo Chauvet-Thiry, and Nathalie Leblanc-Fournier, "Posture control in land plants: Growth, position sensing, proprioception, balance, and elasticity," Journal of Experimental Botany 70 (14), 3467-3494 (2019).
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23.Journal ArticleDanai Papageorgiou, Charlotte Christensen, Gabriella E. C. Gall, James Klarevas-Irby, Brendah Nyaguthii, Iain D. Couzin, and Damien R. Farine, "The multilevel society of a small-brained bird," Current Biology 29 (21), R1120-R1121 (2019).
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24.Journal ArticleIyad Rahwan, Manuel Cebrian, Nick Obradovich, Josh Bongard, Jean-François Bonnefon, Cynthia Breazeal, Jacob W. Crandall, Nicholas A. Christakis, Iain D. Couzin, Matthew O. Jackson, Nicholas R. Jennings, Ece Kamar, Isabel M. Kloumann, Hugo Larochelle, David Lazer, Richard McElreath, Alan Mislove, David C. Parkes, Alex Sandy Pentland, Margaret E. Roberts, Azim Shariff, Joshua B. Tenenbaum, and Michael Wellman, "Machine behaviour," Nature 568, 477-486 (2019).
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25.Journal ArticleS. Satoh, S. Awata, Lyndon Alexander Jordan, U. Kakuda, M. Hori, and M. Kohda, "Bi-parental mucus provisioning in the scale-eating cichlid Perissodus microlepis (Cichlidae)," Biological Journal of the Linnean Society 128 (4), 926-935 (2019).
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26.Journal ArticleBjörn Sommer, Stefan Feyer, Daniel Klinkhammer, Karsten Klein, Jonathan Wieland, Daniel Fink, Wolfgang Fiedler, Andrea Flack, Mate Nagy, Martin Wikelski, Harald Reiterer, and Falk Schreiber, "BinocularsVR – A VR experience for the exhibition "From Lake Constance to Africa, a long distance travel with ICARUS"," Electronic Imaging , 177-1-177-8 (2019).
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27.Journal ArticleMatthew M. G. Sosna, Colin R. Twomey, Joseph Bak-Coleman, Winnie Poel, Bryan C. Daniels, Pawel Romanczuk, and Iain D. Couzin, "Individual and collective encoding of risk in animal groups," Proceedings of the National Academy of Sciences of the United States of America 116 (41), 20556-20561 (2019).
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28.Journal ArticleVivek Hari Sridhar, Dominique G. Roche, and Simon Gingins, "Tracktor: Image-based automated tracking of animal movement and behaviour," Methods in Ecology and Evolution 10 (6), 815-820 (2019).
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29.Journal ArticleJosefin Sundin, Mirjam Amcoff, Fernando Mateos-Gonzalez, Graham D. Raby, and Timothy D. Clark, "Long-term acclimation to near-future ocean acidification has negligible effects on energetic attributes in a juvenile coral reef fish," Oecologia 190 (3), 689-702 (2019).
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30.Journal ArticleGerald S. Wilkinson, Gerald G. Carter, Kirsten M. Bohn, Barbara Caspers, Gloriana Chaverri, Damien R. Farine, Linus Günther, Gerald Kerth, Mirjam Knörnschild, Frieder Mayer, Martina Nagy, Jorge Ortega, and Krista Patriquin, "Kinship, association, and social complexity in bats," Behavioral Ecology and Sociobiology 73, 7 (2019).
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31.Journal ArticleGustavo Alarcon-Nieto, Jacob M. Graving, James Klarevas-Irby, Adriana Alexandra Maldonado-Chaparro, Inge Mueller, and Damien R. Farine, "An automated barcode tracking system for behavioural studies in birds," Methods in Ecology and Evolution 9 (6), 1536-1547 (2018).
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32.Journal ArticleChainarong Amornbunchornvej, Ivan Brugere, Ariana Strandburg-Peshkin, Damien R. Farine, Margaret Chatham Crofoot, and Tanya Y. Berger-Wolf, "Coordination event detection and initiator identification in time series data," ACM Transactions on Knowledge Discovery from Data (TKDD) 12 (5), 53 (2018).
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33.Journal ArticleRenaud Bastien, Olivia Guayasamin, Stéphane Douady, and Bruno Moulia, "Coupled ultradian growth and curvature oscillations during gravitropic movement in disturbed wheat coleoptiles," PLoS One 13 (3), e0194893 (2018).
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34.Journal ArticleAndrew M. Berdahl, Albert B. Kao, Andrea Flack, Peter A. H. Westley, Edward A. Codling, Iain D. Couzin, Anthony I. Dell, and Dora Biro, "Collective animal navigation and migratory culture: From theoretical models to empirical evidence," Philosophical Transactions of the Royal Society of London, Series B: Biological Sciences 373 (1746), 20170009 (2018).
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35.Journal ArticleNeeltje J. Boogert, Robert F. Lachlan, Karen A. Spencer, Christopher N. Templeton, and Damien R. Farine, "Stress hormones, social associations and song learning in zebra finches," Philosophical Transactions of the Royal Society of London, Series B: Biological Sciences 373 (1756), 20170290 (2018).
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36.Journal ArticleMauricio Cantor and Damien R. Farine, "Simple foraging rules in competitive environments can generate socially structured populations," Ecology and Evolution 8 (10), 4978-4991 (2018).
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37.Journal ArticleIda Carlén, Len Thomas, Julia Carlström, Mats Amundin, Jonas Teilmann, Nick Tregenza, Jakob Tougaard, Jens C. Koblitz, Signe Sveegaard, Daniel Wennerberg, Olli Loisa, Michael Dähne, Katharina Brundiers, Monika Kosecka, Line Anker Kyhn, Cinthia Tiberi Ljungqvist, Iwona Pawliczka, Radomil Koza, Bartlomiej Arciszewski, Anders Galatius, Martin Jabbusch, Jussi Laaksonlaita, Jussi Niemi, Sami Lyytinen, Anja Gallus, Harald Benke, Penina Blankett, Krzysztof E. Skóra, and Alejandro Acevedo-Gutiérrez, "Basin-scale distribution of harbour porpoises in the Baltic Sea provides basis for effective conservation actions," Biological Conservation 226, 42-53 (2018).
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38.Journal ArticleNora V. Carlson, Susan D. Healy, and Christopher N. Templeton, "Mobbing," Current Biology 28 (18), R1081-R1082 (2018).
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39.Journal ArticleGerald G. Carter, Sofia Forss, Rachel A. Page, and John M. Ratcliffe, "Younger vampire bats (Desmodus rotundus) are more likely than adults to explore novel objects," PLoS One 13 (5), e0196889 (2018).
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40.Journal ArticleBlair R. Costelloe, "Participation by a male Grant's gazelle in the defence of a fawn," African Journal of Ecology 56 (2), 378-380 (2018).
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41.Journal ArticleBlair R. Costelloe and Daniel I. Rubenstein, "Temporal structuring of vigilance behavior by female Thomson’s gazelles with hidden fawns," Animal Behaviour 145, 87-97 (2018).
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42.Journal ArticleIain D. Couzin, "Collective animal migration," Current Biology 28 (17), R976-R980 (2018).
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43.Journal ArticleIain D. Couzin, "Synchronization: The key to effective communication in animal collectives," Trends in Cognitive Sciences 22 (10), 844-846 (2018).
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44.Journal ArticleDavid R. Daversa, Andrea Manica, Jaime Bosch, Jolle Wolter Jolles, and Trenton W. J. Garner, "Routine habitat switching alters the likelihood and persistence of infection with a pathogenic parasite," Functional Ecology 32 (5), 1262-1270 (2018).
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45.Journal ArticleGrace H. Davis, Margaret Chatham Crofoot, and Damien R. Farine, "Estimating the robustness and uncertainty of animal social networks using different observational methods," Animal Behaviour 141, 29-44 (2018).
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46.Journal ArticleJohann Delcourt, Noam Y. Miller, Iain D. Couzin, and Simon Garnier, "Methods for the effective study of collective behavior in a radial arm maze," Behavior Research Methods 50 (4), 1673-1685 (2018).
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47.Journal ArticleJulien Derr, Renaud Bastien, Étienne Couturier, and Stéphane Douady, "Fluttering of growing leaves as a way to reach flatness: Experimental evidence on Persea americana," Interface: Journal of the Royal Society 15 (138), 20170595 (2018).
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48.Journal ArticleThomas Douëllou, Wessam Galia, Stéphane Kerangart, Thierry Marchal, Nadège Milhau, Renaud Bastien, Marion Bouvier, Samuel Buff, Marie-Christine Montel, and Delphine Sergentet-Thevenot, "Milk fat globules hamper adhesion of enterohemorrhagic Escherichia coli to enterocytes: In vitro and in vivo evidence," Frontiers in Microbiology 9, 947 (2018).
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49.Journal ArticleRobert Ian Etheredge, Capucine Avenas, Matthew J. Armstrong, and Molly E. Cummings, "Sex-specific cognitive–behavioural profiles emerging from individual variation in numerosity discrimination in Gambusia affinis," Animal Cognition 21 (1), 37-53 (2018).
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50.Journal ArticleDamien R. Farine, "When to choose dynamic versus static social network analysis," Journal of Animal Ecology 87 (1), 128-138 (2018).